Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 10 threads; openjdk version "11.0.11" 2021-04-20; /Data/UserData/FairWind/Ya.Cloud/core/pipeline/scripts/../juicer/scripts/juicer.sh -t 10 -D /Data/UserData/FairWind/Ya.Cloud/core/pipeline/scripts/../juicer -g mm10 -z /Data/DataBases/mm10/mm10_canonic.fa -p /Data/DataBases/mm10/mm10_canonic.chrom.sizes -s DpnII -y /Data/UserData/FairWind/Ya.Cloud/core/pipeline/data/restriction_sites/RestrictionSites_DpnII_mm10.txt -d /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR6024957-SRR6024958-SRR6024959-SRR6024960/__temp__                                                                                                                                                                                                                                                                                                                                                                                                                            
Sequenced Read Pairs:  423,406,900
 Normal Paired: 404,488,025 (95.53%)
 Chimeric Paired: 12,035,296 (2.84%)
 Chimeric Ambiguous: 1,603,652 (0.38%)
 Unmapped: 5,279,927 (1.25%)
 Ligation Motif Present: 160,032 (0.04%)
Alignable (Normal+Chimeric Paired): 416,523,321 (98.37%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2021-09-05T06:01:26,882]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 101,865,563 (24.06%)
PCR Duplicates: 314,657,758 (74.32%)
Optical Duplicates: 0 (0.00%)
Library Complexity Estimate: 103,736,931
Intra-fragment Reads: 50,030,524 (11.82% / 49.11%)
Below MAPQ Threshold: 20,084,853 (4.74% / 19.72%)
Hi-C Contacts: 31,750,186 (7.50% / 31.17%)
 Ligation Motif Present: 26,649  (0.01% / 0.03%)
 3' Bias (Long Range): 75% - 25%
 Pair Type %(L-I-O-R): 26% - 25% - 25% - 25%
Inter-chromosomal: 6,259,948  (1.48% / 6.15%)
Intra-chromosomal: 25,490,238  (6.02% / 25.02%)
Short Range (<20Kb): 17,852,835  (4.22% / 17.53%)
Long Range (>20Kb): 7,637,215  (1.80% / 7.50%)